Genetic variation of indigenous chicken breeds in China and a Recessive White breed using AFLP fingerprinting

Abstract

Amplified fragment length polymorphism (AFLP) using six marker combinations were applied to detect genetic variation and phylo genetic relationships among 12 indigenous Chinese chicken breeds and a Recessive White chicken breed introduced from France. The DNA was pooled for each group. Polymorphic bands, breed-specific bands and genetic similarity coefficients of 13 chicken breeds were derived from the AFLP data. A total of 280 polymorphic bands was generated from which nine specific bands were observed for the Shouguang and the Dongxiang Dark chicken. One specific band was observed in the pooled DNA of the Jiuyuan Dark chicken, the Xingyi Bantam chicken and the Recessive White chicken. The genetic similarity coefficients among the 12 indigenous Chinese chicken breeds varied between 0.635 - 0.860, and 0.188 - 0.360 between the Recessive White and the indigenous Chinese chicken breeds. The UPGMA based tree yielded two clusters for the 13 chicken breeds, with the Recessive White chickens forming a distinct cluster. In summary, the genetic similarity coefficients and the UPGMA tree of the 13 chicken breeds were consistent with their breeding history and geographical distribution. These results provide useful data with regard to the genetic diversity, genetic relationships and identification of chicken breeds in China.

Keywords: Indigenous chicken breeds, AFLP markers, genetic variation, genetic relationships

South African Journal of Animal Science Vol. 38 (3) 2008: pp. 193-200